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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
26
total RNA-seq
21
ChIP-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
36
DNA accessibility
26
Transcription
21
DNA binding
4
3D chromatin structure
2
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
3
narrow histone mark
Date released
44
October, 2019
31
February, 2023
6
February, 2021
6
July, 2019
4
February, 2020
1
June, 2019
1
May, 2019
Available data
125
bed narrowPeak
121
bam
97
bigWig
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
93
Homo sapiens
Biosample type
91
tissue
2
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
446
epithelium
427
liver
299
heart
250
kidney
159
bone element
159
brain
151
vasculature
149
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
40
hg19
13
GRCh38
Lab
93
AMP-T2D consortium
files.file_type!
bigBed broadPeak
bigBed narrowPeak
organ_slims!
esophagus
BIOSAMPLE
ASSAY
93 results
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ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
islet of Langerhans
1
14
3
4
retina
15
3
tibial nerve
1
5
11
pigmented layer of retina
12
2
tibial artery
1
1
5
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primary cell
retinal pigment epithelial cell
1
1
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