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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
3
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
84
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
65
histone
65
histone modification
43
broad histone mark
22
narrow histone mark
17
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
41
October, 2019
6
August, 2021
6
July, 2019
4
March, 2020
2
February, 2020
1
November, 2017
Available data
104
bam
86
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
13
tsv
11
bed broadPeak
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
105
Homo sapiens
Biosample type
86
tissue
19
primary cell
Organ
938
pancreas
727
liver
670
connective tissue
500
epithelium
489
adipose tissue
heart
276
kidney
245
brain
217
vasculature
215
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
Genome assembly (visualization)
75
hg19
71
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed broadPeak
hdf5
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
heart
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
1
1
aorta
13
4
1
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
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