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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
250
total RNA-seq
84
RNA microarray
35
ATAC-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
254
Transcription
36
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
153
February, 2021
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
8
February, 2023
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
February, 2020
1
May, 2021
Available data
747
bam
680
bigWig
465
fastq
449
bed narrowPeak
358
bigBed narrowPeak
231
tsv
88
txt
86
tagAlign
63
bed broadPeak
bigBed broadPeak
13
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
886
Homo sapiens
Biosample type
515
tissue
343
cell line
15
in vitro differentiated cells
13
primary cell
Organ
938
pancreas
727
liver
673
connective tissue
502
epithelium
487
adipose tissue
360
heart
276
kidney
236
brain
216
vasculature
214
blood vessel
159
bone element
135
artery
83
limb
69
blood
69
bodily fluid
61
musculature of body
56
eye
40
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
885
AMP
1
T1D
Genome assembly (visualization)
632
hg19
548
GRCh38
Lab
814
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
ibed
month_released!
February, 2020
BIOSAMPLE
ASSAY
886 results
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ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
2
1
1
2
1
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
320
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
megakaryocyte
1
See all biosamples
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