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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
9
ChIP-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
24
Transcription
9
DNA binding
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
85
histone modification
60
narrow histone mark
25
broad histone mark
12
control
Date released
18
July, 2019
12
February, 2020
5
November, 2017
3
May, 2019
2
March, 2020
2
October, 2017
2
October, 2019
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
26
tsv
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
45
Homo sapiens
Biosample type
35
tissue
10
primary cell
Organ
784
pancreas
612
liver
594
connective tissue
456
adipose tissue
410
epithelium
260
heart
246
kidney
159
bone element
146
vasculature
144
blood vessel
111
artery
68
blood
68
bodily fluid
54
eye
45
brain
37
limb
28
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
22
hg19
14
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed broadPeak
tagAlign
target.investigated_as!
histone
target.investigated_as!!
histone
BIOSAMPLE
ASSAY
45 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
1
1
1
1
cerebellum (Hemisphere)
1
1
1
1
frontal cortex
2
1
1
temporal lobe
1
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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