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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
17
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
22
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
66
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
37
tissue
Organ
pancreas
612
liver
594
connective tissue
456
adipose tissue
410
epithelium
260
heart
246
kidney
159
bone element
146
vasculature
144
blood vessel
111
artery
68
blood
68
bodily fluid
54
eye
45
brain
37
limb
28
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
37
AMP-T2D consortium
files.file_type!
bigBed broadPeak
tagAlign
organ_slims!
pancreas
target.investigated_as!
histone
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
distal epiphysis of femur
1
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