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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
211
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
183
histone
183
histone modification
113
narrow histone mark
70
broad histone mark
28
control
Date released
85
November, 2017
85
October, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
bigBed broadPeak
32
bed bed3+
21
fastq
15
tsv
1
bed bed3
tagAlign bed3+
Organism
229
Homo sapiens
Biosample type
226
tissue
3
primary cell
Organ
932
pancreas
718
liver
657
connective tissue
489
epithelium
477
adipose tissue
338
heart
265
kidney
229
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
166
GRCh38
118
hg19
Lab
229
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
tagAlign bed3+
lab.title!
Maike Sander, UCSD
month_released!
July, 2019
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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