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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
212
DNA binding
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
28
control
Date released
85
November, 2017
85
October, 2019
28
May, 2019
16
October, 2017
7
July, 2019
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
222
Homo sapiens
Biosample type
215
tissue
7
primary cell
Organ
500
liver
423
pancreas
317
epithelium
252
kidney
222
brain
195
heart
151
vasculature
149
blood vessel
101
bone element
79
artery
79
limb
73
connective tissue
69
blood
69
bodily fluid
52
eye
36
nerve
31
adipose tissue
28
musculature of body
23
embryo
23
spleen
19
lung
18
vein
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
pericardium
1
skin of body
1
thymus
Project
222
AMP
Genome assembly (visualization)
167
GRCh38
124
hg19
Lab
222
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
tsv
month_released!
August, 2017
organ_slims!
pericardium
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 66 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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