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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
ChIP-seq
21
snATAC-seq
20
total RNA-seq
Assay category
98
DNA accessibility
54
Transcription
41
DNA methylation
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
626
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
305
October, 2019
262
August, 2021
198
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
248
bed narrowPeak
242
bam
230
bigWig
210
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
bigBed broadPeak
134
zippedFastqFolder
24
fastq
txt
Organism
224
Homo sapiens
Biosample type
165
primary cell
59
tissue
Organ
98
pancreas
86
epithelium
40
liver
12
connective tissue
11
musculature of body
5
heart
3
eye
3
kidney
Project
134
HPAP
90
AMP
Genome assembly (visualization)
61
hg19
23
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
32
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
files.file_type!
bigBed broadPeak
txt
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
224 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 6 more…
tissue
liver
20
20
islet of Langerhans
18
skeletal muscle tissue
1
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