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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76ChIP-seq
  • 9total RNA-seq
  • 4RRBS
Assay category
  • 76DNA binding
  • 9Transcription
  • 4DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 29control
  • 17narrow histone mark
  • 15broad histone mark
  • 15transcription factor
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 34August, 2017
  • 33February, 2018
  • 15November, 2017
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 142fastq
  • 137bam
  • 113bigWig
  • 94bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 89Homo sapiens
Biosample type
  • 33in vitro differentiated cells
  • 28primary cell
  • 18cell line
  • 10tissue
Organ
  • 29pancreas
  • 26epithelium
  • 21liver
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 89AMP
Genome assembly (visualization)
  • 64hg19
  • 54GRCh38
Lab
  • 89AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 7inconsistent control read length
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

89 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast11
cell line
HepG217
GM128781
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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