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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 370ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 1Hi-C
Assay category
  • 370DNA binding
  • 163Transcription
  • 18DNA accessibility
  • 13D chromatin structure
Target of assay
  • 224transcription factor
  • 82recombinant protein
  • 76control
  • 68histone
  • 68histone modification
  • 37broad histone mark
  • 31narrow histone mark
  • 25RNA binding protein
  • 8chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 167November, 2017
  • 148August, 2017
  • 72September, 2018
  • 48November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • 283bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • bigBed broadPeak
Organism
  • 546Homo sapiens
Biosample type
  • 221cell line
  • 201tissue
  • 114primary cell
  • 16in vitro differentiated cells
Organ
  • 255liver
  • 219pancreas
  • 78epithelium
  • 31connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 4brain
  • 4embryo
Project
  • 552AMP
Genome assembly (visualization)
  • 472GRCh38
  • 470hg19
Lab
  • 551AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

552 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
cell line
HepG219951
GM1287816
tissue
islet of Langerhans6891
liver50
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte2
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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