Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 176ChIP-seq
  • 4RRBS
Assay category
  • 176DNA binding
  • 4DNA methylation
Target of assay
  • 67histone
  • 67histone modification
  • 55transcription factor
  • 54control
  • 35broad histone mark
  • 32narrow histone mark
  • 13RNA binding protein
  • 12chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 55August, 2017
  • 54November, 2017
  • 26December, 2017
  • 22February, 2018
  • 9October, 2017
  • 7November, 2018
  • 6September, 2017
  • 1January, 2019
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 173Homo sapiens
Biosample type
  • 59cell line
  • 48tissue
  • 43in vitro differentiated cells
  • 28primary cell
  • 2stem cell
Organ
  • 65liver
  • 50pancreas
  • 27epithelium
  • 18embryo
  • 12brain
  • 2adipose tissue
  • 2connective tissue
  • 2musculature of body
  • 2vasculature
  • 1blood
  • 1blood vessel
  • 1bodily fluid
Project
  • 180AMP
Genome assembly (visualization)
  • 142hg19
  • 118GRCh38
Lab
  • 180AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

180 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
RRBS
cell line
HepG258
GM128781
tissue
islet of Langerhans18
pancreas10
brain9
liver61
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
primary cell
pancreatic alpha cell11
pancreatic beta cell11
skeletal muscle myoblast21
astrocyte of the cerebellum1
brain microvascular endothelial cell1
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego