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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
79
DNA binding
66
Transcription
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
24
October, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
Available data
154
bam
127
bigWig
112
bed narrowPeak
68
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
196
Homo sapiens
Biosample type
129
tissue
66
cell line
1
primary cell
Organ
939
pancreas
728
liver
671
connective tissue
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
165
GRCh38
130
hg19
Lab
196
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed broadPeak
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
epithelium
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
ascending aorta
16
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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