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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
34
ChIP-seq
10
ATAC-seq
2
single cell RNA-seq
Assay category
58
Transcription
34
DNA binding
10
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
102
bam
85
bigWig
58
tsv
39
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
66
cell line
34
tissue
2
primary cell
Organ
883
pancreas
728
liver
661
connective tissue
488
adipose tissue
450
epithelium
327
heart
276
kidney
247
brain
184
vasculature
182
blood vessel
151
bone element
102
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
41
nerve
37
embryo
26
eye
24
spleen
20
lung
18
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
AMP
Genome assembly (visualization)
89
GRCh38
89
hg19
Lab
102
AMP-T2D consortium
files.file_type!
bigBed broadPeak
month_released!
February, 2023
organ_slims!
lymph node
BIOSAMPLE
ASSAY
102 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
1
23
1
coronary artery
1
5
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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