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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
4
RRBS
4
total RNA-seq
3
pCHi-C
2
Hi-C
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
July, 2019
10
June, 2019
7
March, 2020
7
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
7
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
45
tissue
10
primary cell
Organ
933
pancreas
718
liver
657
connective tissue
489
epithelium
477
adipose tissue
338
heart
265
kidney
230
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
35
hg19
15
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
RRBS
total RNA-seq
pCHi-C
Hi-C
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
psoas muscle
2
1
2
gastrocnemius medialis
1
left ventricle myocardium
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
See all biosamples
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