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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
128
DNA binding
23
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
107
histone
107
histone modification
67
broad histone mark
40
narrow histone mark
24
control
Date released
October, 2019
85
November, 2017
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
130
bam
116
bigWig
98
bed narrowPeak
97
bigBed narrowPeak
80
tagAlign
25
tsv
21
fastq
17
bed broadPeak
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
162
Homo sapiens
Biosample type
152
tissue
10
primary cell
Organ
922
pancreas
721
liver
659
connective tissue
488
adipose tissue
465
epithelium
350
heart
243
kidney
178
vasculature
176
blood vessel
162
brain
159
bone element
113
artery
69
blood
69
bodily fluid
53
musculature of body
37
embryo
33
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
162
AMP
Genome assembly (visualization)
101
GRCh38
58
hg19
Lab
162
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
month_released!
June, 2019
October, 2019
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
22
brain
15
1
1
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
15
1
+ See 16 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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