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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
17
total RNA-seq
8
snATAC-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
187
DNA binding
24
Transcription
14
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
115
histone
115
histone modification
87
narrow histone mark
51
transcription factor
28
broad histone mark
22
control
10
RNA binding protein
10
chromatin remodeller
Date released
86
October, 2019
November, 2017
28
May, 2019
27
December, 2018
18
January, 2019
18
July, 2019
16
October, 2017
15
November, 2018
12
February, 2020
8
January, 2021
2
March, 2020
1
February, 2023
1
January, 2018
Available data
225
bam
211
bigWig
193
bed narrowPeak
118
bigBed narrowPeak
72
fastq
52
tagAlign
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
232
Homo sapiens
Biosample type
156
tissue
61
cell line
15
primary cell
Organ
939
pancreas
675
connective tissue
500
epithelium
489
adipose tissue
471
liver
363
heart
276
kidney
217
vasculature
216
blood vessel
163
brain
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
224
AMP
8
T1D
Genome assembly (visualization)
182
hg19
176
GRCh38
Lab
224
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
month_released!
November, 2017
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
+ See 70 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 2 more…
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