Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
184
DNA binding
21
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
control
Date released
79
October, 2019
70
November, 2017
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
214
bigWig
211
bam
201
bed narrowPeak
125
bigBed narrowPeak
99
tagAlign
45
bed broadPeak
bigBed broadPeak
33
bed bed3+
23
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
217
Homo sapiens
Biosample type
213
tissue
4
primary cell
Organ
881
pancreas
640
connective tissue
570
liver
472
epithelium
465
adipose tissue
343
heart
264
kidney
217
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
57
musculature of body
56
eye
51
blood
51
bodily fluid
30
embryo
30
nerve
20
lung
16
skeleton
16
vein
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
217
AMP
Genome assembly (visualization)
176
GRCh38
130
hg19
Lab
217
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
month_released!
November, 2018
organ_slims!
urinary bladder
target.investigated_as!
control
BIOSAMPLE
ASSAY
217 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
1
1
1
layer of hippocampus
20
substantia nigra
14
1
temporal lobe
13
1
1
angular gyrus
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
Download