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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
142
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
broad histone mark
31
control
Date released
83
October, 2019
43
November, 2017
18
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
180
bam
160
bigWig
140
bed narrowPeak
73
tagAlign
67
bigBed narrowPeak
41
bed broadPeak
bigBed broadPeak
33
bed bed3+
26
tsv
13
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
178
Homo sapiens
Biosample type
168
tissue
10
primary cell
Organ
856
pancreas
644
liver
631
connective tissue
469
adipose tissue
460
epithelium
306
heart
261
kidney
178
brain
176
vasculature
174
blood vessel
159
bone element
123
artery
57
eye
54
blood
54
bodily fluid
52
limb
43
musculature of body
33
embryo
25
nerve
20
lung
16
skeleton
12
spleen
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
178
AMP
Genome assembly (visualization)
118
GRCh38
111
hg19
Lab
178
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed broadPeak
month_released!
November, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
11
brain
7
1
1
1
substantia nigra
8
1
temporal lobe
7
1
1
angular gyrus
8
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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