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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
6
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
119
Transcription
82
DNA accessibility
6
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
transcription factor
Date released
130
August, 2021
47
September, 2023
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
4
April, 2019
3
December, 2019
2
March, 2020
1
June, 2019
1
May, 2019
Available data
143
bed narrowPeak
91
bam
85
bigWig
79
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
221
Homo sapiens
Biosample type
208
tissue
9
primary cell
4
cell line
Organ
759
pancreas
554
connective tissue
439
adipose tissue
394
epithelium
344
liver
246
heart
221
kidney
159
bone element
135
vasculature
133
blood vessel
106
artery
55
brain
34
eye
30
musculature of body
22
embryo
20
lung
17
blood
17
bodily fluid
16
skeleton
15
limb
12
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
174
AMP
47
KPMP
Genome assembly (visualization)
81
GRCh38
12
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
30
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
5
inconsistent ontology term
files.file_type!
bigBed broadPeak
month_released!
October, 2019
target.investigated_as!
histone
transcription factor
BIOSAMPLE
ASSAY
221 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
64
49
4
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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