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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
111
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
79
histone
79
histone modification
45
broad histone mark
34
narrow histone mark
22
control
10
transcription factor
8
RNA binding protein
Date released
715
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
298
bam
275
bed narrowPeak
275
bigWig
274
bigBed narrowPeak
188
bed broadPeak
187
bed bed3+
bigBed broadPeak
1
bedpe
1
fastq
1
hic
Organism
116
Homo sapiens
Biosample type
85
tissue
31
primary cell
Organ
62
heart
26
kidney
12
connective tissue
10
musculature of body
6
epithelium
5
pancreas
3
eye
Project
116
AMP
Genome assembly (visualization)
91
hg19
89
GRCh38
Lab
111
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
22
inconsistent ontology term
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
islet of Langerhans
4
1
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
5
cardiac muscle cell
3
epithelial cell of proximal tubule
3
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