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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
Assay category
342
DNA binding
10
DNA accessibility
9
Transcription
Target of assay
197
transcription factor
71
control
71
histone
71
histone modification
66
recombinant protein
42
broad histone mark
30
RNA binding protein
29
narrow histone mark
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
319
August, 2021
303
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
392
bam
334
bigWig
324
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
bigBed broadPeak
3
tar
Organism
360
Homo sapiens
Biosample type
257
cell line
101
tissue
3
primary cell
Organ
257
liver
85
brain
19
lung
2
epithelium
2
vasculature
1
blood vessel
Project
342
AMP
19
LungMap
Genome assembly (visualization)
230
GRCh38
217
hg19
Lab
342
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed broadPeak
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
cell line
HepG2
257
tissue
layer of hippocampus
22
lung
10
9
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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