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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
3
DNase-seq
3
WGBS
1
FAIRE-seq
1
Hi-C
Assay category
200
DNA binding
89
Transcription
9
DNA methylation
8
DNA accessibility
1
3D chromatin structure
Target of assay
119
histone modification
118
histone
63
broad histone mark
55
narrow histone mark
40
control
39
transcription factor
4
RNA binding protein
2
chromatin remodeller
Date released
397
May, 2021
342
November, 2017
341
May, 2020
314
August, 2021
301
October, 2019
272
August, 2017
260
February, 2021
200
May, 2022
191
February, 2023
166
July, 2018
May, 2019
94
December, 2017
90
July, 2019
80
April, 2019
79
November, 2018
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
19
June, 2019
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
250
fastq
245
bam
237
bigWig
126
bed narrowPeak
89
tsv
69
bigBed narrowPeak
63
tagAlign
39
bed broadPeak
22
bed bed3+
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
300
Homo sapiens
Biosample type
234
tissue
45
primary cell
28
cell line
Organ
188
pancreas
connective tissue
57
adipose tissue
55
liver
29
epithelium
27
blood
27
bodily fluid
26
musculature of body
7
spleen
Project
307
AMP
Genome assembly (visualization)
228
hg19
202
GRCh38
Lab
307
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
May, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
spleen
7
+ See 1 more…
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
1
pancreatic acinar cell
1
cell line
GM12878
27
HepG2
1
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