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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
8
Hi-C
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
66
Transcription
49
DNA binding
34
DNA methylation
9
DNA accessibility
8
3D chromatin structure
Target of assay
64
transcription factor
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
394
May, 2021
390
August, 2017
341
May, 2020
318
August, 2021
312
November, 2017
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
December, 2017
76
April, 2019
73
September, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
58
November, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
148
bam
144
bigWig
67
fastq
65
tsv
59
bed narrowPeak
54
bigBed narrowPeak
30
bed bedMethyl
30
bigBed bedMethyl
13
bed bed3+
9
bed broadPeak
bigBed broadPeak
4
hdf5
1
csv
Organism
166
Homo sapiens
Biosample type
94
tissue
40
cell line
32
primary cell
Organ
41
liver
25
heart
18
brain
18
connective tissue
13
blood
13
bodily fluid
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
musculature of body
8
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
166
AMP
Genome assembly (visualization)
132
hg19
128
GRCh38
Lab
166
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
December, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
spleen
6
2
liver
4
2
1
body of pancreas
2
2
2
omental fat pad
4
1
+ See 27 more…
cell line
HepG2
26
1
GM12878
13
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 21 more…
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