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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
10
MeRIP-seq
5
ATAC-seq
4
total RNA-seq
1
Hi-C
Assay category
31
DNA binding
5
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
13
control
11
narrow histone mark
8
broad histone mark
5
nucleotide modification
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
225
bam
215
bigWig
212
bed narrowPeak
211
bigBed narrowPeak
189
bed broadPeak
188
bed bed3+
bigBed broadPeak
4
tsv
1
bedpe
1
fastq
1
hic
Organism
51
Homo sapiens
Biosample type
36
primary cell
9
tissue
6
cell line
Organ
17
connective tissue
15
pancreas
12
epithelium
10
musculature of body
5
heart
3
eye
3
kidney
Project
51
AMP
Genome assembly (visualization)
31
hg19
30
GRCh38
Lab
36
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
Hi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
5
osteoblast
1
4
cardiac muscle cell
3
+ See 3 more…
tissue
islet of Langerhans
4
4
1
cell line
EndoC_BH1
6
See all biosamples
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