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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
410
DNA binding
7
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
261
transcription factor
82
recombinant protein
75
control
71
histone
71
histone modification
51
RNA binding protein
42
broad histone mark
29
narrow histone mark
18
chromatin remodeller
4
other context
4
other post-translational modification
Date released
683
February, 2021
373
May, 2021
367
August, 2017
341
May, 2020
340
November, 2017
313
August, 2021
274
October, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
80
April, 2019
79
November, 2018
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
9
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
October, 2022
Available data
473
bam
408
bigWig
406
fastq
382
bed narrowPeak
381
bigBed narrowPeak
78
tagAlign
75
bed broadPeak
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
419
Homo sapiens
Biosample type
318
cell line
99
tissue
2
primary cell
Organ
307
liver
85
brain
15
blood
15
bodily fluid
8
spleen
5
pancreas
epithelium
2
vasculature
1
blood vessel
Project
419
AMP
Genome assembly (visualization)
300
GRCh38
277
hg19
Lab
419
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
October, 2022
organ_slims!
epithelium
BIOSAMPLE
ASSAY
419 results
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Clear Filters
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
302
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
pancreatic cell
1
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