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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
963
histone modification
962
histone
492
narrow histone mark
469
broad histone mark
465
transcription factor
control
105
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
11
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
36
bam
36
bed narrowPeak
36
bigWig
36
fastq
34
bigBed narrowPeak
5
bed broadPeak
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
26
cell line
3
in vitro differentiated cells
2
tissue
Organ
19
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
31
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
organ_slims!
nerve
target.investigated_as!
control
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
16
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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