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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
61
ATAC-seq
36
ChIP-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
74
Transcription
61
DNA accessibility
36
DNA binding
Target of assay
22
histone
22
histone modification
14
broad histone mark
9
control
8
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
52
February, 2023
45
October, 2019
5
May, 2019
3
February, 2020
2
August, 2021
2
July, 2019
Available data
104
bam
92
bed narrowPeak
87
bigWig
60
tsv
28
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
bigBed broadPeak
6
tagAlign
Organism
175
Homo sapiens
Biosample type
108
tissue
66
cell line
1
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
123
GRCh38
103
hg19
Lab
175
AMP-T2D consortium
files.file_type!
bigBed broadPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
islet of Langerhans
14
1
2
4
retina
3
15
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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