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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
45
ATAC-seq
11
ChIP-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
45
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
5
July, 2019
5
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
80
bam
72
bigWig
60
bed narrowPeak
59
tsv
11
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
4
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
116
Homo sapiens
Biosample type
64
cell line
49
tissue
3
primary cell
Organ
808
pancreas
596
connective tissue
586
liver
445
adipose tissue
430
epithelium
286
heart
249
kidney
159
bone element
154
vasculature
153
blood vessel
147
brain
114
artery
63
blood
63
bodily fluid
56
eye
37
musculature of body
35
limb
26
embryo
20
lung
16
skeleton
14
nerve
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
116
AMP
Genome assembly (visualization)
111
GRCh38
77
hg19
Lab
116
AMP-T2D consortium
files.file_type!
bigBed broadPeak
target.investigated_as!
broad histone mark
control
BIOSAMPLE
ASSAY
116 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
3
tibial artery
1
1
4
pulmonary artery
2
pericardium
1
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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