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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 494ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1DNase-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 494DNA binding
  • 193Transcription
  • 24DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 294transcription factor
  • 108control
  • 89histone modification
  • 88histone
  • 82recombinant protein
  • 54RNA binding protein
  • 54narrow histone mark
  • 34broad histone mark
  • 19chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 257November, 2017
  • 194May, 2020
  • 63December, 2017
  • 54August, 2017
  • 50November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 1December, 2018
  • 1February, 2020
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 728Homo sapiens
Biosample type
  • 358tissue
  • 343cell line
  • 15in vitro differentiated cells
  • 12primary cell
Organ
  • 939pancreas
  • 728liver
  • 675connective tissue
  • 502epithelium
  • 489adipose tissue
  • 363heart
  • 276kidney
  • 248brain
  • 219vasculature
  • 217blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 63musculature of body
  • 57eye
  • 41nerve
  • 37embryo
  • 24spleen
  • 20lung
  • 18vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 728AMP
Genome assembly (visualization)
  • 562hg19
  • 482GRCh38
Lab
  • 657AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 14inconsistent control read length
  • 8inconsistent control run_type
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

728 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver14516720311111
right lobe of liver1031121
cell line
HepG232014112221
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte451
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
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