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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 676ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 5DNase-seq
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 676DNA binding
  • 347Transcription
  • 216DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 371transcription factor
  • 231histone
  • 231histone modification
  • 139narrow histone mark
  • 92broad histone mark
  • 88recombinant protein
  • 77control
  • 73RNA binding protein
  • 27chromatin remodeller
  • 5nucleotide modification
  • 1other context
  • 1other post-translational modification
Date released
  • 231November, 2017
  • 148May, 2021
  • 144May, 2020
  • 120October, 2019
  • 66August, 2021
  • 63November, 2018
  • 62December, 2017
  • 60July, 2019
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 41August, 2017
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 23June, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1356Homo sapiens
Biosample type
  • 435primary cell
  • 404cell line
  • 331tissue
  • 182in vitro differentiated cells
  • 4stem cell
Organ
  • 367liver
  • 200pancreas
  • 151epithelium
  • 76brain
  • 64connective tissue
  • 58blood
  • 58bodily fluid
  • 47kidney
  • 39vasculature
  • 38blood vessel
  • 32heart
  • 22musculature of body
  • 17adipose tissue
  • 16vein
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 4eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1185AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1048hg19
  • 899GRCh38
Lab
  • 1138AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 131inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bigBed broadPeak
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1356 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
DNase-seq
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
endothelial cell of umbilical vein1411
cell line
HepG2277512112
GM1287856
EndoC_BH122263
Panc1111
H1-hESC8
tissue
islet of Langerhans221037621341
liver423111
brain11111
heart53111
body of pancreas71
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte7181
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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