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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 495ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2DNase-seq
  • 1FAIRE-seq
Assay category
  • 495DNA binding
  • 100DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 338transcription factor
  • 98histone
  • 98histone modification
  • 88recombinant protein
  • 64RNA binding protein
  • 60control
  • 49broad histone mark
  • 49narrow histone mark
  • 27chromatin remodeller
  • 3nucleotide modification
  • 1other context
  • 1other post-translational modification
Date released
  • 231November, 2017
  • 70October, 2019
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32February, 2021
  • 28December, 2018
  • 24July, 2019
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16June, 2019
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 8August, 2017
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 723Homo sapiens
Biosample type
  • 404cell line
  • 136primary cell
  • 110tissue
  • 70in vitro differentiated cells
  • 3stem cell
Organ
  • 352liver
  • 72epithelium
  • 62pancreas
  • 56blood
  • 56bodily fluid
  • 33kidney
  • 32vasculature
  • 31blood vessel
  • 15vein
  • 14brain
  • 14heart
  • 13musculature of body
  • 11embryo
  • 8connective tissue
  • 7artery
  • 5limb
  • 3eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 694AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 568hg19
  • 496GRCh38
Lab
  • 679AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 80inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

723 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
FAIRE-seq
cell line
HepG2277152112
GM1287856
EndoC_BH122263
Panc1111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein141
macrophage11
skeletal muscle satellite cell8
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
stem cell
hESC3
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