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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 485ChIP-seq
Assay category
  • 485DNA binding
Target of assay
  • 987histone modification
  • 986histone
  • 500narrow histone mark
  • 485broad histone mark
  • 465transcription factor
  • 343control
  • 105RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 103August, 2017
  • 76May, 2021
  • 58May, 2019
  • 53October, 2019
  • 42November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
Available data
  • 427bigWig
  • 420bed narrowPeak
  • 378bam
  • 242bigBed narrowPeak
  • 147tagAlign
  • 118fastq
  • 36bed broadPeak
  • bigBed broadPeak
  • 12bed bed3+
Organism
  • 481Homo sapiens
Biosample type
  • 303tissue
  • 114primary cell
  • 56in vitro differentiated cells
  • 11cell line
  • 1stem cell
Organ
  • 78pancreas
  • 70brain
  • 57heart
  • 44connective tissue
  • 43blood vessel
  • 43vasculature
  • 42epithelium
  • 34limb
  • 34liver
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 7vein
  • 4embryo
  • 4spleen
Project
  • 441AMP
  • 44T1D
Genome assembly (visualization)
  • 379GRCh38
  • 355hg19
Lab
  • 390AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

485 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
islet of Langerhans14
tibial artery14
brain13
layer of hippocampus12
skeletal muscle tissue12
body of pancreas11
kidney10
ascending aorta8
caudate nucleus8
endocrine pancreas8
germinal matrix8
heart8
pancreas8
substantia nigra8
temporal lobe8
angular gyrus7
aorta7
cingulate gyrus7
heart right ventricle7
middle frontal area 467
thoracic aorta7
muscle of leg4
right atrium auricular region4
spleen4
right cardiac atrium3
right lobe of liver3
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein7
pancreatic ductal cell6
mesenchymal stem cell4
pancreatic acinar cell4
skeletal muscle satellite cell4
epithelial cell of proximal tubule3
pancreatic alpha cell3
pancreatic beta cell3
kidney epithelial cell2
hepatocyte1
naive thymus-derived CD4-positive, alpha-beta T cell1
neutrophil1
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
primitive gut cell2
Posterior foregut1
endocrine cell1
posterior foregut1
cell line
EndoC_BH16
Panc14
HepG21
stem cell
hESC1
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