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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
18
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
118
DNA binding
25
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
95
histone
95
histone modification
84
narrow histone mark
26
control
11
broad histone mark
Date released
86
October, 2019
25
November, 2017
17
July, 2019
13
February, 2020
6
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
153
Homo sapiens
Biosample type
146
tissue
7
primary cell
Organ
564
connective tissue
449
pancreas
445
adipose tissue
324
liver
299
heart
250
kidney
231
epithelium
159
bone element
152
brain
151
vasculature
150
blood vessel
116
artery
55
eye
47
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
10
embryo
9
blood
9
bodily fluid
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
96
hg19
90
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed narrowPeak
fastq
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
11
1
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
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primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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