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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
11
total RNA-seq
6
Hi-C
3
RRBS
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
36
DNA binding
14
Transcription
6
3D chromatin structure
4
DNA methylation
3
DNA accessibility
Target of assay
19
histone
19
histone modification
17
control
12
broad histone mark
7
narrow histone mark
Date released
24
August, 2017
16
October, 2019
10
July, 2019
6
March, 2020
3
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
99
bam
99
bigWig
87
bed narrowPeak
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
65
Homo sapiens
Biosample type
60
tissue
5
primary cell
Organ
564
connective tissue
449
pancreas
445
adipose tissue
324
liver
299
heart
250
kidney
231
epithelium
159
bone element
152
brain
151
vasculature
150
blood vessel
116
artery
55
eye
47
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
10
embryo
9
blood
9
bodily fluid
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
29
hg19
12
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigBed narrowPeak
fastq
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
tibial nerve
11
5
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
muscle of leg
1
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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