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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
18
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
38
tissue
Organ
838
pancreas
634
connective tissue
473
adipose tissue
441
epithelium
354
liver
293
heart
250
kidney
159
bone element
147
vasculature
145
blood vessel
110
artery
92
brain
55
eye
38
limb
37
embryo
34
musculature of body
17
nerve
16
skeleton
12
blood
12
bodily fluid
9
vein
7
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
38
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
tagAlign
month_released!
April, 2020
November, 2018
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
distal epiphysis of femur
1
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