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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
59
ChIP-seq
6
WGBS
4
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
59
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
24
histone
24
histone modification
23
control
16
broad histone mark
12
transcription factor
8
narrow histone mark
Date released
386
February, 2021
47
August, 2017
18
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
430
bam
413
bigWig
389
tsv
44
fastq
13
bed narrowPeak
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
460
Homo sapiens
Biosample type
460
tissue
1
in vitro differentiated cells
Organ
836
pancreas
616
connective tissue
461
adipose tissue
428
epithelium
346
liver
268
heart
240
kidney
159
bone element
135
vasculature
134
blood vessel
107
artery
75
brain
54
eye
37
embryo
33
limb
24
musculature of body
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
461
AMP
Genome assembly (visualization)
403
GRCh38
403
hg19
Lab
461
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
tagAlign
month_released!
July, 2019
organ_slims!
intestine
BIOSAMPLE
ASSAY
461 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
3
10
1
white adipose tissue
12
omental fat pad
1
8
1
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in vitro differentiated cells
white fat cell
1
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