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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
48
snATAC-seq
47
WGBS
45
single cell RNA-seq
39
ATAC-seq
3
Hi-C
Assay category
121
Transcription
87
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
September, 2020
45
February, 2021
August, 2020
3
October, 2022
Available data
134
zippedFastqFolder
121
fastq
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
258
Homo sapiens
Biosample type
258
primary cell
Organ
126
epithelium
126
pancreas
Project
258
HPAP
Genome assembly (visualization)
3
hg19
Lab
2870
AMP-T2D consortium
343
Kyle Gaulton, UCSD
258
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
bigBed narrowPeak
tar
month_released!
August, 2020
September, 2020
BIOSAMPLE
ASSAY
258 results
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total RNA-seq
snATAC-seq
WGBS
single cell RNA-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
31
22
1
pancreatic beta cell
10
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
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