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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
36
DNA binding
14
Transcription
6
3D chromatin structure
6
DNA methylation
3
DNA accessibility
Target of assay
19
histone
19
histone modification
17
control
12
broad histone mark
7
narrow histone mark
Date released
26
August, 2017
16
October, 2019
10
July, 2019
5
March, 2020
3
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
99
bam
99
bigWig
87
bed narrowPeak
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
66
Homo sapiens
Biosample type
61
tissue
5
primary cell
Organ
836
pancreas
656
connective tissue
481
adipose tissue
433
liver
429
epithelium
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
31
hg19
12
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
tar
month_released!
September, 2020
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
tibial nerve
11
5
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
muscle of leg
1
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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