Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
Assay category
124
DNA binding
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
28
control
12
broad histone mark
Date released
85
October, 2019
28
November, 2017
10
October, 2017
6
July, 2019
3
May, 2019
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
133
Homo sapiens
Biosample type
126
tissue
7
primary cell
Organ
435
pancreas
292
epithelium
237
liver
224
kidney
178
connective tissue
133
brain
131
heart
101
bone element
85
vasculature
83
blood vessel
80
adipose tissue
58
artery
50
eye
40
musculature of body
31
limb
23
embryo
19
lung
16
skeleton
15
blood
15
bodily fluid
12
nerve
11
spleen
9
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
133
AMP
Genome assembly (visualization)
87
hg19
79
GRCh38
Lab
133
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
tsv
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
133 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
RRBS
tissue
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
cerebellum (Hemisphere)
3
1
+ See 65 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
Download