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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
13
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
Hi-C
Assay category
36
DNA accessibility
13
DNA binding
9
Transcription
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
280
August, 2017
228
October, 2019
226
May, 2021
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
94
November, 2017
59
September, 2020
47
September, 2023
44
December, 2017
41
July, 2019
41
November, 2019
40
May, 2024
33
September, 2018
29
October, 2018
24
February, 2018
23
May, 2019
19
April, 2020
19
March, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
November, 2020
Available data
59
bam
37
bed narrowPeak
31
bigWig
tsv
2
bedpe bed3+
2
hic
Organism
59
Homo sapiens
Biosample type
40
tissue
15
cell line
5
in vitro differentiated cells
Organ
35
pancreas
19
lung
15
epithelium
1
adipose tissue
1
connective tissue
Project
41
AMP
19
LungMap
Genome assembly (visualization)
39
hg19
37
GRCh38
Lab
41
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
21
inconsistent ontology term
files.file_type!
bigBed narrowPeak
tsv
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
1
lung
10
9
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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