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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
67
ChIP-seq
6
WGBS
4
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
67
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
430
bam
413
bigWig
389
tsv
44
fastq
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
468
Homo sapiens
Biosample type
468
tissue
1
in vitro differentiated cells
Organ
849
pancreas
638
connective tissue
469
adipose tissue
435
epithelium
422
liver
274
heart
240
kidney
159
bone element
142
brain
141
vasculature
140
blood vessel
113
artery
54
eye
39
musculature of body
37
embryo
33
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
469
AMP
Genome assembly (visualization)
404
hg19
403
GRCh38
Lab
469
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
vcf
month_released!
July, 2019
organ_slims!
stomach
BIOSAMPLE
ASSAY
469 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
10
1
white adipose tissue
12
omental fat pad
1
8
1
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in vitro differentiated cells
white fat cell
1
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