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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 65ChIP-seq
  • 9total RNA-seq
  • 4RRBS
Assay category
  • 65DNA binding
  • 9Transcription
  • 4DNA methylation
Target of assay
  • 34histone
  • 34histone modification
  • 29control
  • 18narrow histone mark
  • 16broad histone mark
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 34August, 2017
  • 33February, 2018
  • 8November, 2017
  • 1December, 2017
  • 1January, 2019
  • 1October, 2017
Available data
  • 142fastq
  • 137bam
  • 113bigWig
  • 94bed narrowPeak
  • bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 78Homo sapiens
Biosample type
  • 33in vitro differentiated cells
  • 28primary cell
  • 9cell line
  • 8tissue
Organ
  • 29pancreas
  • 26epithelium
  • 12embryo
  • 10liver
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 78AMP
Genome assembly (visualization)
  • 53hg19
  • 42GRCh38
Lab
  • 78AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 8inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

78 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast11
cell line
HepG28
GM128781
tissue
islet of Langerhans3
liver11
skeletal muscle tissue2
brain1
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