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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 150ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 4ATAC-seq
  • 1Hi-C
Assay category
  • 163Transcription
  • 150DNA binding
  • 4DNA accessibility
  • 13D chromatin structure
Target of assay
  • 76control
  • 48histone
  • 48histone modification
  • 26narrow histone mark
  • 26transcription factor
  • 22broad histone mark
  • 2RNA binding protein
  • 1recombinant protein
Date released
  • 131August, 2017
  • 58September, 2018
  • 47November, 2017
  • 25July, 2018
  • 14February, 2018
  • 14October, 2018
  • 8December, 2017
  • 8January, 2019
  • 5November, 2018
  • 5October, 2017
  • 1August, 2018
  • 1December, 2018
  • 1June, 2018
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • 283bed narrowPeak
  • bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 317Homo sapiens
Biosample type
  • 145tissue
  • 99primary cell
  • 58cell line
  • 16in vitro differentiated cells
Organ
  • 193pancreas
  • 69liver
  • 64epithelium
  • 28connective tissue
  • 24adipose tissue
  • 4blood
  • 4bodily fluid
  • 4embryo
  • 3spleen
  • 1brain
Project
  • 318AMP
Genome assembly (visualization)
  • 239hg19
  • 234GRCh38
Lab
  • 317AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

318 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans6891
liver15
white adipose tissue12
subcutaneous adipose tissue7
body of pancreas13
primary cell
pancreatic endocrine cell23
pancreatic ductal cell1342
pancreatic acinar cell844
pancreatic beta cell102
pancreatic alpha cell101
cell line
HepG24851
GM128784
in vitro differentiated cells
pancreatic endoderm4
adipocyte2
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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