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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 50ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
Assay category
  • 50DNA binding
  • 37Transcription
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 20control
  • 15histone
  • 15histone modification
  • 15transcription factor
  • 10narrow histone mark
  • 5broad histone mark
  • 1RNA binding protein
Date released
  • 33December, 2017
  • 21April, 2018
  • 11August, 2017
  • 11July, 2018
  • 5January, 2018
  • 4November, 2017
  • 4November, 2018
  • 4October, 2018
  • 1August, 2018
  • 1January, 2019
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 100Homo sapiens
Biosample type
  • 38in vitro differentiated cells
  • 37primary cell
  • 16tissue
  • 5cell line
  • 4stem cell
Organ
  • 34pancreas
  • 31epithelium
  • 14embryo
  • 9connective tissue
  • 7liver
  • 4adipose tissue
  • 1blood
  • 1bodily fluid
  • 1brain
  • 1spleen
Project
  • 99AMP
  • 1HPAP
Genome assembly (visualization)
  • 72GRCh38
  • 67hg19
  • 5hg18
Lab
  • 98AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 11inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

100 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
adipocyte5
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
tissue
adipose tissue3
body of pancreas3
islet of Langerhans21
pancreas2
cerebellum (Hemisphere)1
cell line
HepG24
GM128781
stem cell
hESC31
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