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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
single cell RNA-seq
22
total RNA-seq
21
ATAC-seq
18
ChIP-seq
1
pCHi-C
Assay category
45
Transcription
21
DNA accessibility
18
DNA binding
Target of assay
18
control
Date released
38
September, 2020
24
May, 2022
10
October, 2018
4
December, 2018
3
October, 2017
2
December, 2017
1
August, 2018
1
July, 2018
1
November, 2017
1
November, 2018
Available data
152
fastq
113
bam
88
bed narrowPeak
71
bigWig
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
85
Homo sapiens
Biosample type
43
tissue
39
primary cell
2
cell line
1
in vitro differentiated cells
Organ
46
pancreas
17
epithelium
8
adipose tissue
8
connective tissue
5
spleen
3
liver
1
blood
1
bodily fluid
Project
47
AMP
38
HPAP
Genome assembly (visualization)
22
hg19
4
GRCh38
Lab
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
23
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
85 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
islet of Langerhans
6
18
body of pancreas
1
4
spleen
1
4
omental fat pad
1
3
subcutaneous adipose tissue
3
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primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
cell line
GM12878
1
HepG2
1
in vitro differentiated cells
white fat cell
1
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