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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 112ChIP-seq
  • 4RRBS
Assay category
  • 112DNA binding
  • 4DNA methylation
Target of assay
  • 54control
  • 51histone
  • 51histone modification
  • 26broad histone mark
  • 25narrow histone mark
  • 7transcription factor
  • 1RNA binding protein
Date released
  • 44August, 2017
  • 24December, 2017
  • 22February, 2018
  • 16November, 2017
  • 6September, 2017
  • 3October, 2017
  • 1January, 2019
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 115Homo sapiens
Biosample type
  • 43in vitro differentiated cells
  • 30tissue
  • 27primary cell
  • 14cell line
  • 2stem cell
Organ
  • 42pancreas
  • 27epithelium
  • 18embryo
  • 17liver
  • 6brain
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
  • 1connective tissue
Project
  • 116AMP
Genome assembly (visualization)
  • 78hg19
  • 60GRCh38
Lab
  • 116AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 8inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

116 results

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Clear Filters
ChIP-seq
RRBS
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
islet of Langerhans18
liver31
brain3
pancreas2
skeletal muscle tissue2
primary cell
pancreatic alpha cell11
pancreatic beta cell11
skeletal muscle myoblast11
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cell line
HepG213
GM128781
stem cell
hESC2
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