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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61ChIP-seq
  • 41ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 61DNA binding
  • 57DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 38control
  • 16transcription factor
  • 7histone
  • 7histone modification
  • 5broad histone mark
  • 2narrow histone mark
Date released
  • 39May, 2022
  • 27November, 2017
  • 21December, 2017
  • 16February, 2021
  • 10August, 2017
  • 8January, 2019
  • 5January, 2018
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 166fastq
  • 144bam
  • 110bigWig
  • 92bed narrowPeak
  • bigBed narrowPeak
  • 40zippedFastqFolder
  • 11bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 130Homo sapiens
Biosample type
  • 56primary cell
  • 36cell line
  • 18in vitro differentiated cells
  • 17tissue
  • 3stem cell
Organ
  • 44liver
  • 42pancreas
  • 40epithelium
  • 6embryo
  • 5connective tissue
  • 3blood
  • 3bodily fluid
  • 2adipose tissue
  • 1brain
Project
  • 74AMP
  • 56HPAP
Genome assembly (visualization)
  • 28hg19
  • 24GRCh38
  • 5hg18
Lab
  • 73AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

130 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell22
Langerhans cell161
pancreatic beta cell13
pancreatic acinar cell4
cell line
HepG22751
GM128783
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
tissue
liver11
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
stem cell
hESC21
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