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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
53
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
24
histone
24
histone modification
22
control
12
broad histone mark
12
narrow histone mark
7
transcription factor
4
RNA binding protein
1
recombinant protein
Date released
31
August, 2017
12
October, 2018
7
August, 2020
5
November, 2018
4
September, 2020
2
December, 2017
2
November, 2017
1
January, 2019
Available data
203
fastq
193
bam
180
bigWig
170
bed narrowPeak
bigBed narrowPeak
1
zippedFastqFolder
Organism
64
Homo sapiens
Biosample type
32
in vitro differentiated cells
17
tissue
11
primary cell
4
cell line
Organ
40
connective tissue
13
pancreas
11
epithelium
9
adipose tissue
5
liver
4
spleen
1
blood
1
bodily fluid
Project
53
AMP
11
HPAP
Genome assembly (visualization)
40
GRCh38
30
hg19
Lab
53
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
31
hepatocyte
1
tissue
omental fat pad
5
spleen
4
subcutaneous adipose tissue
4
body of pancreas
3
right lobe of liver
1
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
cell line
HepG2
3
GM12878
1
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