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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 53ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 53DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 24histone
  • 24histone modification
  • 22control
  • 12broad histone mark
  • 12narrow histone mark
  • 7transcription factor
  • 4RNA binding protein
  • 1recombinant protein
Date released
  • 31August, 2017
  • 12October, 2018
  • 7August, 2020
  • 5November, 2018
  • 4September, 2020
  • 2December, 2017
  • 2November, 2017
  • 1January, 2019
Available data
  • 203fastq
  • 193bam
  • 180bigWig
  • 170bed narrowPeak
  • bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 64Homo sapiens
Biosample type
  • 32in vitro differentiated cells
  • 17tissue
  • 11primary cell
  • 4cell line
Organ
  • 40connective tissue
  • 13pancreas
  • 11epithelium
  • 9adipose tissue
  • 5liver
  • 4spleen
  • 1blood
  • 1bodily fluid
Project
  • 53AMP
  • 11HPAP
Genome assembly (visualization)
  • 40GRCh38
  • 30hg19
Lab
  • 53AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

64 results

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ChIP-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte31
hepatocyte1
tissue
omental fat pad5
spleen4
subcutaneous adipose tissue4
body of pancreas3
right lobe of liver1
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
cell line
HepG23
GM128781
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