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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 85single cell RNA-seq
  • 75ATAC-seq
  • 52WGBS
  • 50ChIP-seq
  • 48snATAC-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 123DNA accessibility
  • 52DNA methylation
  • 50DNA binding
  • 13D chromatin structure
Target of assay
  • 41control
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
  • 1transcription factor
Date released
  • 158May, 2022
  • 102August, 2017
  • 45February, 2021
  • 27September, 2018
  • 25September, 2020
  • 24October, 2018
  • 11November, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5December, 2018
  • 5January, 2019
  • 4November, 2017
  • 2August, 2018
  • 2December, 2017
  • 1June, 2018
  • 1March, 2019
Available data
  • 455fastq
  • 373bam
  • 318bigWig
  • 180bed narrowPeak
  • bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 442Homo sapiens
Biosample type
  • 257primary cell
  • 171tissue
  • 13cell line
  • 1in vitro differentiated cells
Organ
  • 263pancreas
  • 135epithelium
  • 26liver
  • 19adipose tissue
  • 19connective tissue
  • 10spleen
  • 2blood
  • 2bodily fluid
Project
  • 231AMP
  • 211HPAP
Genome assembly (visualization)
  • 174hg19
  • 171GRCh38
Lab
  • 211Klaus Kaestner, Upenn
  • 205AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

442 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snATAC-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1032931
pancreatic beta cell1021616
pancreatic acinar cell424
pancreatic ductal cell42
tissue
islet of Langerhans9720
liver13
body of pancreas425
spleen127
subcutaneous adipose tissue10
cell line
HepG25141
GM128782
in vitro differentiated cells
white fat cell1
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