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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 319ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 1ATAC-seq
Assay category
  • 319DNA binding
  • 209Transcription
  • 10DNA methylation
  • 1DNA accessibility
Target of assay
  • 130histone
  • 130histone modification
  • 127control
  • 69narrow histone mark
  • 62transcription factor
  • 60broad histone mark
  • 8RNA binding protein
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 144August, 2017
  • 76February, 2023
  • 65November, 2017
  • 42December, 2017
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 6September, 2017
  • 5January, 2018
  • 5October, 2018
  • 4January, 2019
  • 4November, 2018
  • 4October, 2017
  • 2August, 2018
  • 2June, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 543Homo sapiens
Biosample type
  • 263primary cell
  • 125in vitro differentiated cells
  • 85tissue
  • 67cell line
  • 4stem cell
Organ
  • 224pancreas
  • 163epithelium
  • 83liver
  • 73connective tissue
  • 27embryo
  • 17adipose tissue
  • 7brain
  • 4blood
  • 4bodily fluid
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
  • 1spleen
Project
  • 433AMP
  • 111HPAP
Genome assembly (visualization)
  • 313hg19
  • 291GRCh38
  • 5hg18
Lab
  • 433AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

544 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
tissue
islet of Langerhans286
liver1611
white adipose tissue12
pancreas32
adipose tissue13
cell line
HepG263
GM128784
stem cell
hESC31
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